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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaacatatttttatatatatatatctttatacttcaacattgttttgaaagcttctgactcttttaacttcatcagATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTCGTGCAATATGAAG

Basic information

species Arabidopsis thaliana
transcript AT1G58350.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G58350.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 1
gtatggaacatatttttatatatatatatctttatacttcaacattgttttgaaa-----gcttctgactcttttaact-tcat-cagATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTCGTGCAATATGAAG
|||||   ||  |||| || |   | | |  |||   ||||   || ||||  ||     |  | | | |||| |  || | || |||||||||  |||||||  | |||||||||||||||||||||||   |     ||  || |||||  | || || || || |||||||
gtatgctccactttttgatgttcttttgt--ttacttttcagttttcttttttaattctggtcttttattcttattgctgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTATCCCGGGATTCCGGCGCGGGTTGTTCAGTATGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttatacttcaacattgttttgaaagcttctgactcttttaacttcatcagATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTCGTGCAATATGAAG
                                        ttttaac  putative branch site (score: 2)
                                              cttcatc  CT-rich tract
                                        ttttaactt  TA-rich tract