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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggcctctttcccccttttttctgcaccccatttgttcgacgtattctcccactgggaattgacttttgtgggggaaacgaatggttttcaatttcatgtctcaaattcttctcctcatttttggatgttgttgatgttttcacagCAAGGTTTATGCGATGGAAGTTGTAGGATCTATACCTCAACAACTCTGGACCTTGGAATACCTGACAAATCT

Basic information

species Arabidopsis thaliana
transcript AT1G56140.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035975|gb|AU236165.2|AU236165
EST:     AAATGCGACTGCAGTTTCGAAAACTCCACAATCTGCCGCATTACCAACAT                         CAAGGTTTATGCGATGGAAGTTGTAGGATCTATACCTCAACAACTCTGGAC
genomic: AAATGCGACTGCAGTTTCGAAAACTCCACAATCTGCCGCATTACCAACATgtagggcctc ... gttttcacagCAAGGTTTATGCGATGGAAGTTGTAGGATCTATACCTCAACAACTCTGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcatgtctcaaattcttctcctcatttttggatgttgttgatgttttcacagCAAGGTTTATGCGATGGAAGTTGTAGGATCTATACCTCAACAACTCTGGACCTTGGAATACCTGACAAATCT
                                      tgttgat  putative branch site (score: 4)
                                            tgttttc  CT-rich tract
            aaattctt  TA-rich tract