Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116477873|gb|EG520465.1|EG520465EST: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAG GAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
genomic: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAGgtatacacag ... agggaatcagGAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
EST:
gi|116477874|gb|EG520466.1|EG520466EST: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAG GAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
genomic: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAGgtatacacag ... agggaatcagGAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
EST:
gi|116481395|gb|EG523987.1|EG523987EST: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAG GAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
genomic: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAGgtatacacag ... agggaatcagGAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
EST:
gi|124715705|gb|EH807107.1|EH807107EST: TCTCCAAGGATTCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAG GAAGACTGGGTCTTGTGTAGGGTATTCCATAA
genomic: TCTCCAAGGA-TCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAGgtatacacag ... agggaatcagGAAGACTGGGTCTTGTGTAGGGTATTCCATAA
EST:
gi|301501111|gb|HO206651.1|HO206651EST: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGACCTCTCCAAAG GAAGACTGGGTCTTGTGTAGGGTATTCCATAAAAATACGGAAGGAGTTATA
genomic: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAGgtatacacag ... agggaatcagGAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
EST:
gi|116481389|gb|EG523981.1|EG523981EST: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAG GAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
genomic: GTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAGgtatacacag ... agggaatcagGAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttagcaaatctgtaacgagtaatatacgtgtttatgtgttgttgagggaatcagGAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATATGTAGAGACAACATGGGAAGCTGTTTTGATGAGACAGCCTCTGCATCGC
ctgtaac putative branch site (score: 3)
agtaatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatacacagttaaataatccagttattgatcgtcagttaatctcttcttagcaaatctgtaacgagtaatatacgtgtttatgtgttgttgagggaatcagGAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATATGTAGAGACAACATGGGAAGCTGTTTTGATGAGACAGCCTCTGCATCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT