1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcaagtgttctttttttttgttatgaatactttctttatctgcagttttgtgtctatagctttctttatctttatctcatatgattactttctgcagCCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTTGCTTCAAGTAACTCTTATCAAG
species | Arabidopsis thaliana |
transcript | AT1G55820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACATTTCATGAGGTGAGAAGTAAAAGGGAGAAAAAGAAGGAG CCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTTEST: gi|86054420|gb|DR350177.1|DR350177
genomic: ATACATTTCATGAGGTGAGAAGTAAAAGGGAGAAAAAGAAGGAGgcaagtgttc ... ctttctgcagCCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTT
EST: ATACATTTCATGAGGNGAGAAGTAAAAGGGAGAAAAAGAAGGAG CCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTTEST: gi|86063696|gb|DR359453.1|DR359453
genomic: ATACATTTCATGAGGTGAGAAGTAAAAGGGAGAAAAAGAAGGAGgcaagtgttc ... ctttctgcagCCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTT
EST: ATACATTTCATGAGGNGAGAAGTAAAAGGGAGAAAAAGAAGGAG CCTATAGTGCCAGNTACACAANCAAGTGGNAGAGGTGGTCGGAGGAACTTTEST: gi|116477540|gb|EG520132.1|EG520132
genomic: ATACATTTCATGAGGTGAGAAGTAAAAGGGAGAAAAAGAAGGAGgcaagtgttc ... ctttctgcagCCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTT
EST: ATACATTTCATGAGGTGAGAAGTAAAAGGGAGAAAAAGAAGGAG CCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTT
genomic: ATACATTTCATGAGGTGAGAAGTAAAAGGGAGAAAAAGAAGGAGgcaagtgttc ... ctttctgcagCCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTT
cagttttgtgtctatagctttctttatctttatctcatatgattactttctgcagCCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTTGCTTCAAGTAACTCTTATCAAG
ttactttct CT-rich tract
tttctttatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgttctttttttttgttatgaatactttctttatctgcagttttgtgtctatagctttctttatctttatctcatatgattactttctgcagCCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTTGCTTCAAGTAACTCTTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA