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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactcttgaatttggcaatcatgtagagcttgtgattagtttcacttacatgtcttagatgtatgatgtagcatatatgcctgttttatttttggatatacctactgatatagtttcctgattggctcagATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTACTGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTATCGG

Basic information

species Arabidopsis thaliana
transcript AT1G55150.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55150.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os01g10050.1 (Oryza sativa), 3'ss of exon 2
gtaaactcttgaatttggcaatcatgtagagcttgtga-ttagtttcacttacatgtcttagatgtatgatgtagcatatat-gcctgttttatttttggatatacctactgatatagtttcctgattggctcagATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTACTGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTATCGG
                             | ||| |||  ||  |||  |   || |      | | | || | | | || |  | |  | |||||   |||   || |   |  ||  ||||  ||||   |||| ||||||||| ||||  |||  || ||||| |||   |||||||| ||||| || ||||| || |||||||||||  ||| ||||||||||||||| ||
-----------------------------accttctgaactacattctttattattttgctcttttttaatcttggacatcttacattctatatttcctgat---ccaagatacttaacttcc--attg-tgcagAATATGTTTTGCAAGAAATTACAAAAGCTGGGTTTGTAGAACCTACTCCTATCCAGTCTCAAGGTTGGCCAATGGCACTGAGGGGACGTGATCTTATTGG

upper sequence: AT1G55150.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G01260.1 (Glycine max), 3'ss of exon 2
gtaaactcttgaatttggcaatcatgtagagcttgtgattagtttcacttacatgtcttagatgtatgatgtagcatatatgcctgttttatttttggatatacctactgatatagtttcctgattggctcagATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTACTGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTATCGG
                    ||    || |   | ||||||  ||     |  |||  |     ||||   |  |||        |||| |        | |||  | |  | | |      | ||    |||| |||||  |||||||  |||  || ||||| ||||||||||||||||| || |||||||| || ||||| |||||| ||||||| |||||||| || ||
--------------------attgattatattgtatgattatcttgcaaaatttgttatcagattatgggatgacat--------gtttcaaac---agtgtactgatt--tttcggccttggtttaatccagAATATGTAATGGAAGAAATTACAAAAGCTGGCTTTACTGAACCTACGCCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTGATAGG

upper sequence: AT1G55150.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G11880.1 (Glycine max), 3'ss of exon 1
gtaaactcttgaatttggcaatcatgtagagcttgtgattagttt-cacttacatgtcttagatgtatgatgtagcatatatgcctgttttatttttggatatacctactgatatagtttcctgattggctcagATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTACTGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTATCGG
                    ||    || |   | ||||||  || ||   |  | | | |||| ||||   |  |         ||||| |        | |||  | |  | | |      | ||    |||| |||||  |||||||  |||  || ||||| ||||||||||||||||| || |||||||| || ||||| |||||| ||||||| |||||||| || ||
--------------------attgattatattgtatgattatcttgcaaaaaattttatcagat-tatgggatgac--------ttgtttcaaac---agtgtactgatt--tttcggccttggtttaatccagAATATGTAATGGAAGAAATTACAAAAGCTGGCTTTACTGAACCTACGCCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTAATAGG

upper sequence: AT1G55150.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G20670.1 (Glycine max), 3'ss of exon 2
gtaaactcttgaatttggcaatcatgtagagcttgtgattagtttcacttacatgtcttagatgtatgatgtagcatatatgcctgttttatttttggatatacctactgatatagtttcct--gattggctcagATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTACTGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTATCGG
                                 | |||||| |   |  |   | ||||  |    | || || || ||       |   || |||  |    | ||||||| |     |||  | ||    |||| |||||  || ||||  |||  || ||||| |||||||||||||| || || |||||||| || ||||| |||||| ||||||| |||||||| || ||
---------------------------------tatgatta-tactatatgattatcttgcaaaatttat-tatcagattatgggatgacatgtttcaaacagcgtactgatttttcagccttggtttaatccagAATATGTACTGCAAGAAATTACAAAAGCTGGCTTTACTGAACCTACACCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTGATAGG

upper sequence: AT1G55150.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv09s0002g02100.t01 (Vitis vinifera), 3'ss of exon 2
gtaaactcttgaatttggcaatcatgtagagcttgtgattagtttcacttacatgtcttagatgtatgatgtagcatatatgcctgttttatttttggatatacctactgatatagtttcctgattggctcagATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTACTGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTATCGG
                             |    |||| | |   | ||| | ||      |  |||| | | |   ||     | ||  | ||   | | ||  || | | || ||  | |  |     |||| |||||  || ||||  |||  || ||||| ||| |||||||||| || || ||| |||| || |||||||||||| ||||||| |||||| | || ||
----------------------------aaatcagtgactggcaac-ctttcttg---agaagttatgctttggatgatggatattttaaaattgaagttttaattatttaaat-gtacctttgtgactccagAATATGTCATGCAAGAAATTACAAAAGCTGGCTTTGCTGAACCTACACCCATCCAAGCTCAAGGATGGCCAATGGCTTTGAAGGGCCGTGATGTCATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcctgttttatttttggatatacctactgatatagtttcctgattggctcagATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTACTGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTATCGG
        ttttatttttggatat  TA-rich tract