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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacatgctatcttcttttgctgcctcttattgttttacttcaagaaagttttaaatttttgatgtcatgtattggttttcattagATATGTATTGAAAAAGATCCGTCTTGCCCGGCAAACTCAAAGGACCAGACGATCTGCACATCAAGAG

Basic information

species Arabidopsis thaliana
transcript AT1G54510.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063725|gb|DR359482.1|DR359482
EST:     GGATCTTTTGGGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAA                         ATATGTATTGAAAAAGATCCGTCTTGCCCGGCAAACTCAAAGGACCAGACG
genomic: GGATCTTTTGGGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAAgtgagacatg ... ttttcattagATATGTATTGAAAAAGATCCGTCTTGCCCGGCAAACTCAAAGGACCAGACG
EST: gi|86063724|gb|DR359481.1|DR359481
EST:     GGATCTTTTGGGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAA                         ATATGTATTGAAAAAGATCCGTCTTGCCCGGCAAACTCAAAGGACCAGACG
genomic: GGATCTTTTGGGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAAgtgagacatg ... ttttcattagATATGTATTGAAAAAGATCCGTCTTGCCCGGCAAACTCAAAGGACCAGACG
EST: gi|86063722|gb|DR359479.1|DR359479
EST:     GGATCTTTTGGGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAA                         ATATGTATTGAAAAAGATCCGTCTTGCCCGGCAAACTCAAAGGACCAGACG
genomic: GGATCTTTTGGGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAAgtgagacatg ... ttttcattagATATGTATTGAAAAAGATCCGTCTTGCCCGGCAAACTCAAAGGACCAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttacttcaagaaagttttaaatttttgatgtcatgtattggttttcattagATATGTATTGAAAAAGATCCGTCTTGCCCGGCAAACTCAAAGGACCAGACGATCTGCACATCAAGAG
                          ttttgat  putative branch site (score: 4)
                                             ttttcatt  putative PPT
        ttcaagaaagttttaa  TA-rich tract