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...tggtttcattttgtttcgatgatgtgaattgttttctcttccatgtctactatgatattctgctcaataatcatttttttttggttttttactgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGAAAGCTTGCGAGGAAGCAGCTAAAATATGGATGCAG
species | Arabidopsis thaliana |
transcript | AT1G54100.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGEST: gi|86061617|gb|DR357374.1|DR357374
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG CCAATTGCTCAAGTTGTGGAAGCTTCACTAGAGGATTACGAGCAAGGTTTGEST: gi|116420806|gb|EG463398.1|EG463398
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGEST: gi|116486590|gb|EG529182.1|EG529182
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGEST: gi|116486594|gb|EG529186.1|EG529186
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGEST: gi|301502094|gb|HO207634.1|HO207634
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGEST: gi|301501173|gb|HO206713.1|HO206713
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGEST: gi|301502366|gb|HO207906.1|HO207906
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
tctactatgatattctgctcaataatcatttttttttggttttttactgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGAAAGCTTGCGAGGAAGCAGCTAAAATATGGATGCAG
tactgat putative branch site (score: 2)
ttttttact CT-rich tract
tcaataatcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtttcattttgtttcgatgatgtgaattgttttctcttccatgtctactatgatattctgctcaataatcatttttttttggttttttactgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGAAAGCTTGCGAGGAAGCAGCTAAAATATGGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - tctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctca