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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattattataatattcttaaaatcttgattttaaaagaaaagttttgattggctaatttttgattctttttattactatgtagCTTGATGATTGGGTGTTGTGTCGTATCTACAAGAAAAACAATAGTACAGCATCTAGACATCATCATCATCTTCATCATATTCATCTAGATAATGATCATC

Basic information

species Arabidopsis thaliana
transcript AT1G52880.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G35560.1 (Glycine max), 3'ss of exon 2
-gtatattattataatattcttaa-------aatcttgattttaaaagaaaagttt---tgattggctaatttttgattct---ttttattactatgtagCTTGATGATTGGGTGTTGTGTCGTATCTACAAGAAAAACAATA-GTACAG--CATCTAGACATCATCATCATCTTCATCATATTCATCTAGATAATGATCATC
  | ||||||   | | || || |       ||| |||   || | | |    |||   |||||    |||||     | |   |||| |   | | |||||||||||||||||| |||| || ||||||||||| | ||| | | | ||  || | |   | ||| |        ||   ||  ||  | || ||       
attctattatctaagttttgttcatgaattaaatattgtgctttatatatccctttgggtgatttctgaatttggtgctttggattttgtgtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGACAGGGAAGATTCAATGGATG-ACATGATTGGAG--

upper sequence: AT1G52880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA12G34990.1 (Glycine max), 3'ss of exon 2
-----gtatattat-tataatattcttaaaatct--tgattttaaaagaaaagttttga--ttggctaatttttgattctttttattactatgt----agCTTGATGATTGGGTGTTGTGTCGTATCTACAAGAAAAACAATA-GTACAG--CATCTAGACATCATCATCATCTTCATCATATTCATCTAGATAATGATCATC
      |  ||||  ||| |   | |  | ||||    ||       |  || || |||  ||||      |||     ||| | ||  | |||    ||||||||||||||||| |||| || ||||||||||| | ||| | | | ||  || | |   | ||| |        ||   ||  ||  | || ||       
tgtccatgaattaaatattacgctttatatatctatccatccctttgggtaatttctgaatttggtggtgcttttgaattttgtgttggtgtgtgtctagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGAAAGGGAAGATTCAATGGATG-ACATGATTGGAG--

upper sequence: AT1G52880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv19s0014g03300.t01 (Vitis vinifera), 3'ss of exon 2
gtatattattataatattcttaaaatcttgattttaaaagaaaagttttgattggctaatttttgat-tctttttattactatgt-agCTTGATGATTGGGTGTTGTGTCGTATCTACAAGAAAAACAATA-GTACAGCAT-CTAGACATCATCATCATCTTCATCATATTCATCTAGATAATGATCATC
      || |||  |  ||| | ||||  |||          ||||  ||||    ||  | ||||| |  ||| ||| || ||| ||||||||||||||||| | ||||| ||||||||||| ||||| | | | || |  || ||      ||       |  |||   |  |  | |   |      
-----gtactattctgatctgataatccggat----------aagt--tgatgatttatctgttgatataatttaatttctttgttagCTTGATGATTGGGTGCTATGTCGAATCTACAAGAAGAACAACACGCATAGAACGCTGGATCCTGACAAGGATGACTCCATGGACGACATGCTTGGGCCGG--


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaaaagaaaagttttgattggctaatttttgattctttttattactatgtagCTTGATGATTGGGTGTTGTGTCGTATCTACAAGAAAAACAATAGTACAGCATCTAGACATCATCATCATCTTCATCATATTCATCTAGATAATGATCATC
                                   ttctttttattact  CT-rich tract
                         taatttttgattcttt  TA-rich tract