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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattaaaatcgcttacagatttttcagcagtttaaagtttgttacttgatcacttacttgtgaattgaatgtgttttttagGGCTTGCAACGTTTTTGTACAGAACATAAGATTAAACTATCAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G52160.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52160.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv09s0002g04000.t01 (Vitis vinifera), 3'ss of exon 2
--gtaaattaaaatcg---cttacagatttttc---agcagttta-aagtttgttacttgatcacttacttgtgaattgaatgtgtt-------ttttagGGCTTGCAACGTTTTTGTACAGAACATAAGATTAAACTATCAAAG
    ||  ||   | |    |  ||| || | |   || | ||||  |   | |||  |||| |  | | |      | || || ||       ||  |||||||||||||||| || ||||| |||||||||||  | ||||||
actcaatctacttttggatttggcagcttctgctagagaattttatgaacctcttaaatgattatatccctaacctcttaacgtattagtttctttccagGGCTTGCAACGTTTCTGCACAGAGCATAAGATTAAGTTGTCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagtttaaagtttgttacttgatcacttacttgtgaattgaatgtgttttttagGGCTTGCAACGTTTTTGTACAGAACATAAGATTAAACTATCAAAG
                        cacttac  putative branch site (score: 2)
                                             tgtttttt  putative PPT
     ttaaagttt  TA-rich tract