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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaacaagaacaacaactcttttcatttgtttattgttattttataaatgaaaattattggtgtaattttcggttcttgttgtggtgatgactgatagGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCAAGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGT

Basic information

species Arabidopsis thaliana
transcript AT1G51340.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51340.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G41460.1 (Glycine max), 3'ss of exon 2
--------gtaacaacaagaacaacaactcttttcatttgtttattgttattttataaatgaaaattattggtgtaattttcggttcttgttgtggtgatgactgatagGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCAAGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGT
        || |  |   ||   | ||   |    ||  | | |    ||| || |  ||| |  | | ||    || | |    | || ||| |   |||      |||||| |||||||||||||| || |||||||| || ||| | ||||| ||||| ||||| || || || ||||||||||| ||  |||||||||| |||||
ggaactaagtcaggatgtgagtgaaaaaaatcccaat--gatcaagactatatt-tgtatgtatttgaatgcatcaagtgttaaatattattg-gtccatg-----cagGTCCAGTAGAGCTTGCTGCTGTAGGAGTTTCCATAGCTCTCTTCAATCAAGTATCAAGGATCGCAATATTCCCACTTGTCAGTGTCACAACTTCTTTTGT

upper sequence: AT1G51340.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA15G03930.1 (Glycine max), 3'ss of exon 2
gtaacaacaagaacaacaactcttttcattt--gtttattgttattttataaatgaaaattattggtgtaattttcggttcttgttgtggtgatgactgatagGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCAAGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGT
   | | ||  ||| | || ||       |   |  || | |  || |||  ||   |||   |  |      |   ||  |   | |  |     |    |||||| |||||||||||||| || |||||||| || ||| | ||||| ||||| ||||| || || || ||||| ||||| ||  ||||||| || |||||
---aaatcagaaaccaaaaatccccatgatcaagactactttatttatatgtatttgaatgccttataatgcatctagtgttaaatattattggtccatgcagGTCCAGTAGAGCTTGCTGCTGTAGGAGTTTCCATAGCTCTCTTCAATCAAGTATCAAGGATCGCAATATTCCCGCTTGTCAGTGTCACAACCTCTTTTGT

upper sequence: AT1G51340.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 3'ss of exon 2
-----gtaacaacaagaacaacaactcttttcatttgtttattgttattttataaatgaaaattattggtgtaattttcggttcttgttgtggtgatgactgatagGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCAAGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGT
           |   |      |       ||||| |||   |||| ||||   |||  |||  | |    |  | |||| || ||||| |  | ||   | |||||||| || || |||||||| || ||||||||||||||| | ||||| ||||| ||||| || || || ||||||||||| ||  ||||||| || || ||
gatattctctgatgggttttggagactaactcatt-gttg--tgttcttttgataattgaaaggactcacatggtattcgatt-ttgtt-tcataatccat-atagGTCCAGTGGAACTTGCTGCTGTAGGAGTTTCTATTGCTGTGTTCAATCAAGTATCAAGGATCGCAATATTCCCACTTGTCAGTGTCACAACCTCTTTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaatgaaaattattggtgtaattttcggttcttgttgtggtgatgactgatagGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCAAGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGT
     tgaaaattatt  TA-rich tract