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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacttttatctcttcttccatttttggggtttattttaatttcaggattttcttcattcacttattgaagttgaagctgattagttcaaattagggtttgattcaatctaaggactcacattattagtttttacaattgttagGCTATTTATTGTGAAGCTGTAGCTATGGTTGAAGAATATCAGCAAGCTATTTCAGTAGCTAACCATGGGGGAATTCGTGATGTTCAAGGTCTATACCCTC

Basic information

species Arabidopsis thaliana
transcript AT1G50710.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877527|gb|AU238358.1|AU238358
EST:     GCGAGAGAGGAGATGTCTCGGGAGAGACTTCGGTATTTGGAAGCTATG                         GCTATTTATTGTGAAGCTGTAGCTATGGTTGAAGAATATCAGCAAGCTATT
genomic: GCGAGAGAGGAGATGTCTCGGGAGAGACTTCGGTATTTGGAAGCTATGgtaacacttt ... caattgttagGCTATTTATTGTGAAGCTGTAGCTATGGTTGAAGAATATCAGCAAGCTATT
EST: gi|164122414|gb|ES105489.1|ES105489
EST:     GAGGAGATGTCTCGGGAGAGACTTCGGTATTTGGAAGCTATG                         GCTATTTATTGTGAAGCTGTAGCTATGGTTGAAGAATATCAGCAAGCTATT
genomic: GAGGAGATGTCTCGGGAGAGACTTCGGTATTTGGAAGCTATGgtaacacttt ... caattgttagGCTATTTATTGTGAAGCTGTAGCTATGGTTGAAGAATATCAGCAAGCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattagggtttgattcaatctaaggactcacattattagtttttacaattgttagGCTATTTATTGTGAAGCTGTAGCTATGGTTGAAGAATATCAGCAAGCTATTTCAGTAGCTAACCATGGGGGAATTCGTGATGTTCAAGGTCTATACCCTC
                        gactcac  putative branch site (score: 2)
                                       tttttac  putative PPT
                               attattagtttttaca  TA-rich tract