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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctcttctttcttactttaaggattctcttaattttggcaagatttgatacaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG

Basic information

species Arabidopsis thaliana
transcript AT1G49240.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 2
-------------------------------gttagtct---cttctttcttactttaaggattctcttaatt-------ttggcaagatttgatacaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
                               |||   |     ||||  || |   |||  ||| |   ||||       |   ||||  || |      |   |||    ||||||| || |||||||||||||||||| | || |||||||| ||| ||||||| || ||  |||||   || || ||||||||||||   || |||||||
gtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcatttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATG

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 2
----------------gttagtc--tcttctttcttactttaaggattctcttaattttggcaagatttgatacaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
                 ||   |  || | ||| ||| || | ||| |   ||  |       |    | |  |    ||  |  |  ||||||| || ||||| |||||||| |||||||| || ||||| ||| | |||||||| ||| | ||   ||||||||||||||| |||   || |||||||
gtttgattcttataccattgtccattcgttttttttaattcatggaatgagttgttcaaaaataataataactctcactctctc-tctagGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATG

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 2
---------------------gttagtctcttc---tttcttactttaagg--attctcttaattttggcaagatttgatacaagttcctttg-----------tgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
                       || ||||| |   || |||  ||| |||    | |  ||||||       | | |||     ||  |||            |  ||||||| || |||||||||||||||||| | || |||||||| ||| | |||||||| ||  | ||   |||||||||||||||||||   ||||| ||||
gtaattgtggccacttggcgtcatattctctgcagattcctttttttcaggcagcttttataatttaattttcagtcgatgttcattattttccccccatctcttatagGCTGGCTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCAAGTATAGTTGGTCGTCCACGCCACACTGGTGTCATGGTTGGGATGGGACAGAAGGATG

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
---------------gttagtctcttctttcttactttaaggattctcttaattttgg---caagatttgatacaagttcct----ttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
                || || | || |||| |    |   |  |||  ||   |||    ||  | |  ||    | |  |    | |  ||||||||||| ||||| |||||||||||||| || || || |||||| ||||||| |||||| ||||   |||||| ||||||||||||  ||| || ||||
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
-----------gttagtctcttctttcttac-tttaaggattc---tcttaattttggcaagatttgatacaagttcctttgtg-cagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
           ||   | | |  ||| || | | |    || |   |||| | ||    |     | ||  |  ||  | ||   ||||| ||||| ||||| || |||||||| || || || || |||||| ||||||| |||||| |||||  |||||| ||||||||||||  ||| || ||||
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 2
----------gttagtctcttctttcttactttaaggattctcttaattttggc-----------aagatttg---atacaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
             ||| |||||| |  |   | |  |  ||| ||| | | ||            | |||||     || ||    || ||| ||||| ||||| ||||| ||||||||||| || || || || |||||| ||||||| |||||| | |||  |||||| ||||||||||||  ||| || ||||
gttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 2
---------------------gttagtctcttctttcttactttaaggattctcttaattttggcaagatttgat---acaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG-
                     |||||| |  |      || ||  ||  ||   || ||| | ||   ||||  |   |  |    || ||| ||||| ||||| ||||  || |||||||| || || || || |||||| |||||||||||||| | |||  |||||| ||||||||||||  ||| || |||| 
gttagtactttgcagtttcttgttagtgtaattgcatctattt--agtcttggtttcattattgctcaatttatttaaatgatcatctgtgtacagGCAGGATTTGCTGT-GACGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGTCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGC

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------------gttagtctcttctttcttactttaaggattctcttaattttggcaagatttg-atacaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
                                 ||  | | || |||  | ||      || |||  |||||    ||| |||  ||   |     | | ||||||||||||| || || |||||||||||||| || || || || ||| |||| ||||| || || ||   |||||||||||||||||||  ||| |||||||
gtctgttgtttctttcttgcttgatatgcagatttgttgtgttgtttgctgctcctcaaatgctc--aatttgaataagctttccatgttatgctttatatgcagGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATG

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 3
--------------------------------gttag-tctcttctttcttactttaaggattctcttaattttggcaagatttgatacaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
                                 || | | |   ||   |||   | |    ||||  || | ||   |  |||| |  |      |    ||||||||| ||||||||||| ||||||||| | || |||||||||||  ||||||| || || || ||   ||| || ||||| || |||   ||||| || |
ctcttttgcatctttatttataatgggcagacattggatgtagactaatttatgatcaatcctctcgaaactgtgtttaattttggtgaa-----ttgaacgcagGCTGGTTTCGCTGGAGACGATGCTCCCCGCGCTGTTTTCCCCAGCATTGTTGGGCGCCCCAGGCACACTGGAGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------gttagtctcttctttcttactttaa--ggattctcttaattttggcaagatttgatacaagttcctttg-tgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
                         | || |    |     | |||| |   |   | ||   |      |    ||| ||    ||   ||    ||||||||| ||||||||||| ||||||||| | || |||||||||||  ||||||| || || || ||   ||| || ||||| || |||   ||||| || |
caattcatgctataatggcgttcatgataatactattcaagtgacttcagttgtgctgtccagaacgaaaccgtgtttaattgtggtgaattgaacgcagGCTGGTTTCGCTGGAGACGATGCTCCCCGCGCTGTTTTCCCCAGCATTGTTGGGCGCCCCAGGCACACTGGAGTGATGGTCGGTATGGGACAGAAGGACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86042721|gb|DR338476.1|DR338476
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042719|gb|DR338474.1|DR338474
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042715|gb|DR338470.1|DR338470
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042705|gb|DR338460.1|DR338460
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042729|gb|DR338484.1|DR338484
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGGATGGKTAAG                         GCTGGATTCGCTKGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042724|gb|DR338479.1|DR338479
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTNGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042707|gb|DR338462.1|DR338462
EST:     CTGATGACATTCAACYTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042714|gb|DR338469.1|DR338469
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042723|gb|DR338478.1|DR338478
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|47831799|gb|CK121483.1|CK121483
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042717|gb|DR338472.1|DR338472
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042704|gb|DR338459.1|DR338459
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|124729886|gb|EH821288.1|EH821288
EST:     CAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042730|gb|DR338485.1|DR338485
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042716|gb|DR338471.1|DR338471
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042728|gb|DR338483.1|DR338483
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042706|gb|DR338461.1|DR338461
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042718|gb|DR338473.1|DR338473
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042720|gb|DR338475.1|DR338475
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042722|gb|DR338477.1|DR338477
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATTATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042726|gb|DR338481.1|DR338481
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042711|gb|DR338466.1|DR338466
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042710|gb|DR338465.1|DR338465
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|124772495|gb|EH862624.1|EH862624
EST:     TGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGT
genomic: TGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGT
EST: gi|124789998|gb|EH879677.1|EH879677
EST:     TTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: TTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
EST: gi|86042727|gb|DR338482.1|DR338482
EST:     CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG                         GCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT
genomic: CTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctct ... ctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttaaggattctcttaattttggcaagatttgatacaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
                                          ttcctttgt  CT-rich tract
          attctcttaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtctcttctttcttactttaaggattctcttaattttggcaagatttgatacaagttcctttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG