1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
...tctctgccatgttggatttaagttggtttgttttgaatacacctgctttaactgtggtgggtgatctcttactgattttatcttaataatttttgcacagAGGGTGATGGATCAAAAATATTTGTCAGTTGCATTGCATTTCGGGATCGAGTCTGTGAGGATATTATTGAAGCTTATCGCTTACCGCCGAATACATACGC
species | Arabidopsis thaliana |
transcript | AT1G49040.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGTGACCCTGCAAGTTTNCCACGGAGCTATCCCATAGTCTTGACGG AGGGTGATGGATCAAAAATATTTTGTCAGTTTGCATTGCATTTNCGGGATCEST: gi|124973174|gb|EL046825.1|EL046825
genomic: TTCCAGTGACCCTGCAAGTTTCCCACGGAGCTATCCCATAGTCTTGACGGgtatgtgatt ... ttttgcacagAGGGTGATGGATCAAAAATATTT-GTCAGTT-GCATTGCATTT-CGGGATC
EST: TTCCAGTGACCCTGCAAGTATCCCACGGAGCTATCCCATAGTCTTGACGG AGGGTGATGGATCAAAAATATTTGTCAGTTGCATTGC
genomic: TTCCAGTGACCCTGCAAGTTTCCCACGGAGCTATCCCATAGTCTTGACGGgtatgtgatt ... ttttgcacagAGGGTGATGGATCAAAAATATTTGTCAGTTGCATTGC
ctttaactgtggtgggtgatctcttactgattttatcttaataatttttgcacagAGGGTGATGGATCAAAAATATTTGTCAGTTGCATTGCATTTCGGGATCGAGTCTGTGAGGATATTATTGAAGCTTATCGCTTACCGCCGAATACATACGC
tttttgc CT-rich tract
tcttactgattttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctgccatgttggatttaagttggtttgttttgaatacacctgctttaactgtggtgggtgatctcttactgattttatcttaataatttttgcacagAGGGTGATGGATCAAAAATATTTGTCAGTTGCATTGCATTTCGGGATCGAGTCTGTGAGGATATTATTGAAGCTTATCGCTTACCGCCGAATACATACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC