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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactactcatttcaaattctatcatcttcctttttttatcctttttaggtttctgattcttaattcttttcacagGTTCATAGATTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G47830.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116464176|gb|EG506768.1|EG506768
EST:     AATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGAATACGAG                         GTTCATAGGTTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAG
genomic: AATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGAATACGAGgtactactca ... cttttcacagGTTCATAGATTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAG
EST: gi|116464171|gb|EG506763.1|EG506763
EST:     AATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGAATACGAG                         GTTCATAGATTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAG
genomic: AATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGAATACGAGgtactactca ... cttttcacagGTTCATAGATTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatcttcctttttttatcctttttaggtttctgattcttaattcttttcacagGTTCATAGATTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAG
                                     tcttaat  putative branch site (score: 3)
                                    ttcttaattcttttc  CT-rich tract
          tttttttatccttttt  TA-rich tract