Sequence
atgc intronic sequence ATGC exonic sequencegttaatatctttgcattttgctactgcgttttatacttttattcgtcactgccttttgcgaaaacgatgaactttgttttgttttcttgcttgctttgcagTCGGATCATAAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGGCTAACCCGTGGAAGAAAGTAATCGAAAGCAATGGGATCTTGTTATCCAT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G47278.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164015795|gb|ES057904.1|ES057904EST: TCCTGAGTGTTTGTATGCAAGGCCAG TCGGATCATAAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGG
genomic: TCCTGAGTGTTTGTATGCAAGGCCAGgttaatatct ... tgctttgcagTCGGATCATAAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGG
EST:
gi|116456119|gb|EG498711.1|EG498711EST: ATAAATGTGAGAAACAGAAGCAACTCCTGAGTGTTTGTATGCAAGGCCAG TCGGATCATAAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGG
genomic: ATAAATGTGAGAAACAGAAGCAACTCCTGAGTGTTTGTATGCAAGGCCAGgttaatatct ... tgctttgcagTCGGATCATAAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGG
EST:
gi|163992523|gb|ES027412.1|ES027412EST: TGAGAAACAGAAGCAACTCCTGAGTGTTTGTATGCAAGGCCAG TCGGATCATAAGAACAAGTCTTGGGGTAAC
genomic: TGAGAAACAGAAGCAACTCCTGAGTGTTTGTATGCAAGGCCAGgttaatatct ... tgctttgcagTCGGATCATAAGAACAAGTCTTGGGGTAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cactgccttttgcgaaaacgatgaactttgttttgttttcttgcttgctttgcagTCGGATCATAAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGGCTAACCCGTGGAAGAAAGTAATCGAAAGCAATGGGATCTTGTTATCCAT
ctttgttttgttttct CT-rich tract
ttttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaatatctttgcattttgctactgcgttttatacttttattcgtcactgccttttgcgaaaacgatgaactttgttttgttttcttgcttgctttgcagTCGGATCATAAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGGCTAACCCGTGGAAGAAAGTAATCGAAAGCAATGGGATCTTGTTATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA