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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctcttaattttcttgttgtgatctgttcccgggaacattcttacagttgatgctgactgttcctttttctgtgtagGCATTTGTTCTTAAATACCTTCTTTACTTTCCGGGTGACAGAGTAGCTTCCCCCTGTATGGGTGTCTGGACATTATCTAAAGATCGTCATGTTGTGTCTG

Basic information

species Arabidopsis thaliana
transcript AT1G43690.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125062953|gb|EL131116.1|EL131116
EST:     GATTAGTGCAGCATGAAGGTGGGCCCTGCGGTGTTTTAGCAGCACTACAA                         GCATTTGTTCTTAAATACCTTCTTTACTTTCCGGGT
genomic: GATTAGTGCAGCATGAAGGTGGGCCCTGCGGTGTTTTAGCAGCACTACAAgtaattctct ... ttctgtgtagGCATTTGTTCTTAAATACCTTCTTTACTTTCCGGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttcccgggaacattcttacagttgatgctgactgttcctttttctgtgtagGCATTTGTTCTTAAATACCTTCTTTACTTTCCGGGTGACAGAGTAGCTTCCCCCTGTATGGGTGTCTGGACATTATCTAAAGATCGTCATGTTGTGTCTG
                             tgctgac  putative branch site (score: 2)
                                   ctgttcctttttctgt  CT-rich tract
               attctta  TA-rich tract