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gtaaagattaaaaataaaaccttctcttgattgtgtttaacccttttatgttttggtgttaagtttaacagtttcttctttgtttatcagAATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAGCTTGTGATGCTCAGGGCAAAGAATCAG
species | Arabidopsis thaliana |
transcript | AT1G43190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAA AATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAGEST: gi|124929761|gb|EL007278.1|EL007278
genomic: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAgtaaagatta ... tgtttatcagAATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAG
EST: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAA AATGATTTGCTTCAEST: gi|124768152|gb|EH858282.1|EH858282
genomic: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAgtaaagatta ... tgtttatcagAATGATTTGCTTCA
EST: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAA AATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACT
genomic: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAgtaaagatta ... tgtttatcagAATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACT
tttaacccttttatgttttggtgttaagtttaacagtttcttctttgtttatcagAATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAGCTTGTGATGCTCAGGGCAAAGAATCAG
gtttaac putative branch site (score: 3)
tttcttctttgtttat putative PPT
ttttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagattaaaaataaaaccttctcttgattgtgtttaacccttttatgttttggtgttaagtttaacagtttcttctttgtttatcagAATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAGCTTGTGATGCTCAGGGCAAAGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA