1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtttgcttattgaatggaagtgtatatcataaactcttctgcactacgttcttactgacaattctatgtgacctctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATTGCCCAGAAGGTTGACTTTGCCTACAGTT
species | Arabidopsis thaliana |
transcript | AT1G43170.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAG ATCAGGAAGATNAAGGGATTGEST: gi|164115220|gb|ES061057.1|ES061057
genomic: AGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATTG
EST: AGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGAEST: gi|124957451|gb|EL032286.1|EL032286
genomic: AGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGA
EST: GAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATEST: gi|163989803|gb|EL990785.1|EL990785
genomic: GAAGATGAAGAAGTACGCTACTGTCATCCGTG-TTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACAT
EST: AGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGATTGEST: gi|164140722|gb|ES212910.1|ES212910
genomic: AGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATTG
EST: GTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGAATTGAAGCAGAAGAAGGCTCACATEST: gi|125246197|gb|EL260282.1|EL260282
genomic: GTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGA-TTGAAGCAGAAGAAGGCTCACAT
EST: TACGCTACTGTCATCCGTGTTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCEST: gi|124892912|gb|EH971814.1|EH971814
genomic: TACGCTACTGTCATCCGTG-TTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATC
EST: GCTCACACTCAG ATCAGGAAGATTGAAGGGATTGAAGCAGAAGAAGGCTCAEST: gi|125098273|gb|EL154471.1|EL154471
genomic: GCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGA-TGAAGGGATTGAAGCAGAAGAAGGCTCA
EST: AGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGEST: gi|164224958|gb|EL970886.1|EL970886
genomic: AGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGG
EST: GAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGATTEST: gi|164056353|gb|EL970991.1|EL970991
genomic: GAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATT
EST: GTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATEST: gi|124866584|gb|EH951021.1|EH951021
genomic: GTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACAT
EST: CCGTGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCEST: gi|164197790|gb|EL973939.1|EL973939
genomic: CCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATC
EST: GTACGCTACTGTCATCCGNGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATEST: gi|124709794|gb|EH801196.1|EH801196
genomic: GTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACAT
EST: GTGTTTTGGCTCACACTCAG ATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATC
genomic: GTGTTTTGGCTCACACTCAGgtaagtttgc ... ctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATC
taaactcttctgcactacgttcttactgacaattctatgtgacctctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATTGCCCAGAAGGTTGACTTTGCCTACAGTT
cctct CT-rich tract
aattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgcttattgaatggaagtgtatatcataaactcttctgcactacgttcttactgacaattctatgtgacctctaattacagATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATTGCCCAGAAGGTTGACTTTGCCTACAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG