1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtgattatcgtcttttactttatatattgggttcaaaaacagagtcttggtttgttgcacttctttagttcttatgttctttgattttgttttatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTGCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCTTGC
species | Arabidopsis thaliana |
transcript | AT1G32400.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCCAAAGCGTG GTTCATATACTTGTTCATTGGTATTGGTGTEST: gi|125270361|gb|EL284446.1|EL284446
genomic: TCCCAAAGCGTGgtatgtgatt ... tatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGT
EST: CCCAAAGCGTG GTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTGEST: gi|124747789|gb|EH837919.1|EH837919
genomic: CCCAAAGCGTGgtatgtgatt ... tatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTG
EST: TCCCAAAGCGTG GTTCATATACTTGTTCATTGGTATTGGTEST: gi|125276558|gb|EL290643.1|EL290643
genomic: TCCCAAAGCGTGgtatgtgatt ... tatcatgcagGTTCATATACTTGTTCATTGGTATTGGT
EST: CCCAAAGCGTG GTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTG
genomic: CCCAAAGCGTGgtatgtgatt ... tatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTG
tggtttgttgcacttctttagttcttatgttctttgattttgttttatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTGCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCTTGC
ctttgat putative branch site (score: 5)
ttttgtttt CT-rich tract
tttgattttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgattatcgtcttttactttatatattgggttcaaaaacagagtcttggtttgttgcacttctttagttcttatgttctttgattttgttttatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTGCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT