Sequence
atgc intronic sequence ATGC exonic sequencegtaactaaagatcaactttagtagttgtctatcaaactctaactattcaagtttaattgcttagttatttatattatgtttatttcactcagGCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGAGGTAACACAGTCCCTGAGAGCAGCATATTCATTTTTCATACGCTGATCTTTTATTTCTTCT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G32330.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878089|gb|AU238920.1|AU238920EST: CTGACTCAACAGATGGGTCTCCTCTCTCCTGAAACCTTAGATCTCTCAAG GCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGAGGTAACACAGTC
genomic: CTGACTCAACAGATGGGTCTCCTCTCTCCTGAAACCTTAGATCTCTCAAGgtaactaaag ... tttcactcagGCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGAGGTAACACAGTC
EST:
gi|19798880|gb|AU230170.1|AU230170EST: CTGACTCAACAGATGGGTCTCCTCTCTCCTGAAACCTTAGATCTCTCAAG GCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGAGGTAACACAGTC
genomic: CTGACTCAACAGATGGGTCTCCTCTCTCCTGAAACCTTAGATCTCTCAAGgtaactaaag ... tttcactcagGCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGAGGTAACACAGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctaactattcaagtttaattgcttagttatttatattatgtttatttcactcagGCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGAGGTAACACAGTCCCTGAGAGCAGCATATTCATTTTTCATACGCTGATCTTTTATTTCTTCT
tttatttc CT-rich tract
aagtttaattgcttag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactaaagatcaactttagtagttgtctatcaaactctaactattcaagtttaattgcttagttatttatattatgtttatttcactcagGCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGAGGTAACACAGTCCCTGAGAGCAGCATATTCATTTTTCATACGCTGATCTTTTATTTCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT