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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattttcaaactcttttttaactctttgtggttatataccttttaagactttaaattagatcaagcccatctaaaccaatcaatttaaaccgttttatatttgtagTGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAAACGATCCACGGACATTAAACAAAACCGTGAATATTAGACCTCCCGACAA

Basic information

species Arabidopsis thaliana
transcript AT1G32100.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124729469|gb|EH820871.1|EH820871
EST:     ATATTTATGGTGATGGAAATGTAAAAG                         TGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAA
genomic: ATATTTATGGTGATGGAAATGTAAAAGgtaaaatttt ... atatttgtagTGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAA
EST: gi|86079297|gb|DR375054.1|DR375054
EST:     ACTTCCTCCGAAAGAWAAAGTTAATATTTATGGTGATGGAAATGTAAAAG                         TGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAA
genomic: ACTTCCTCCGAAAGAAAAAGTTAATATTTATGGTGATGGAAATGTAAAAGgtaaaatttt ... atatttgtagTGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattagatcaagcccatctaaaccaatcaatttaaaccgttttatatttgtagTGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAAACGATCCACGGACATTAAACAAAACCGTGAATATTAGACCTCCCGACAA
                 atctaaa  putative branch site (score: 3)
                              aatttaaaccgtttta  TA-rich tract