Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacttgatcttcacttggttaatgatcttgtgttctctggtagcttttatgggttttttgtctaattgctctgttttgtttattatttaatgctgatctgatgtcaatgttgatttgaatgtttgtttgtatagCCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAGTGAGAAAAATGGTGAAAACCGAAATGACGGAAGCCGAGCCTATGGCAAA

Basic information

species Arabidopsis thaliana
transcript AT1G32080.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125176191|gb|EL195675.1|EL195675
EST:     TTAGAGATATTCCGGCTGCTTCAGGTGTCAAAAATACTGCTACATTGTAG                         CCGGTGGATGG
genomic: TTAGAGATATTCCGGCTGCTTCAGGTGTCAAAA-T-CTGCTACATTGTAGgtatgaactt ... gtttgtatagCCGGTGGATGG
EST: gi|86047418|gb|DR343173.1|DR343173
EST:     TGTTAGAGATATTCCGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAG                         CCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAG
genomic: TGTTAGAGATATTCCGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAGgtatgaactt ... gtttgtatagCCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAG
EST: gi|125216194|gb|EL230277.1|EL230277
EST:     AAATCTGCTACATTGTAG                         CCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAG
genomic: AAATCTGCTACATTGTAGgtatgaactt ... gtttgtatagCCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAG
EST: gi|86047419|gb|DR343174.1|DR343174
EST:     TGTTAGAGATATTCCGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAG                         CCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAG
genomic: TGTTAGAGATATTCCGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAGgtatgaactt ... gtttgtatagCCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAG
EST: gi|124962050|gb|EL036501.1|EL036501
EST:     TGTTAGAGATATTCCGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAG                         CCGGTGGATGG
genomic: TGTTAGAGATATTCCGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAGgtatgaactt ... gtttgtatagCCGGTGGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattatttaatgctgatctgatgtcaatgttgatttgaatgtttgtttgtatagCCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAGTGAGAAAAATGGTGAAAACCGAAATGACGGAAGCCGAGCCTATGGCAAA
                                          tttgttt  CT-rich tract
     atttaat  TA-rich tract