1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcgatagttcttcgtctgtgtagatacattgaatctgtgcatgcgctgtgattttatctggcttttgcttcaagaaaattgcaatttgtttgatcgtagGTGAATCTGGGGTTTTGATCAGCGATTATCTTTGTCACTCTTTGAAAATGGCTGT
species | Arabidopsis thaliana |
transcript | AT1G31910.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATTTCAAATTATCCGATCATTTCCGGCGATATCCAATCGCACACTGAG GTGAATCTGGGGTTTTGEST: gi|116471112|gb|EG513704.1|EG513704
genomic: CGATTTCAAATTATCCGATCATTTCCGGCGATATCCAATCGCAGACTGAGgttgttagta ... ttgatcgtagGTGAATCTGGGGTTTTG
EST: CGATTTCAAATTATCCGATCATTTCCGGCGATATCCAATCGCAGACTGAG GTTGTTAGTGAATCTGGGGTTTTGATCAGCGATTATCTTTGTCACTCTTTG
genomic: CGATTTCAAATTATCCGATCATTTCCGGCGATATCCAATCGCAGACTGAGgttgttagta ... ttgatcgtagGT-G--A---A-TCTGGGGTTTTGATCAGCGATTATCTTTGTCACTCTTTG
gctgtgattttatctggcttttgcttcaagaaaattgcaatttgtttgatcgtagGTGAATCTGGGGTTTTGATCAGCGATTATCTTTGTCACTCTTTGAAAATGGCTGT
gtttgat putative branch site (score: 5)
tttgttt CT-rich tract
attttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgatagttcttcgtctgtgtagatacattgaatctgtgcatgcgctgtgattttatctggcttttgcttcaagaaaattgcaatttgtttgatcgtagGTGAATCTGGGGTTTTGATCAGCGATTATCTTTGTCACTCTTTGAAAATGGCTGT
- - - - - - - - - - - agataca
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