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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcaagagattttgagatgtttcaattcatcttctgtaacgtttgcttagcggaatttcagataactttagtagaattctaggattcttttgatgatttagcttcagagatccggaattgaatatatcttgatcttattttagtgatctgcattgttgaatacgtagttgtttctgtgattttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTATCAGGTTGATTGCTGGTACTATATTCATGCATGAGG

Basic information

species Arabidopsis thaliana
transcript AT1G30630.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125211933|gb|EL226887.1|EL226887
EST:     TACAGGCAGTGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAG                         GAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAA
genomic: TACAGGCAGTGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAGgtaattcaag ... ttttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAA
EST: gi|164072361|gb|EL989612.1|EL989612
EST:     TATCGAGTCCTGAAAACAAG                         GAATCAACCATTTCGAGCTTGAGAGAATGGTTGGCAGATCCAACTGTAGGA
genomic: TATCGAGTCCTGAAAACAAGgtaattcaag ... ttttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
EST: gi|164038182|gb|ES180258.1|ES180258
EST:     CTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAG                         GAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
genomic: CTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAGgtaattcaag ... ttttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
EST: gi|125268593|gb|EL282678.1|EL282678
EST:     CTATCGAGTCCTGAAAACAAG                         GAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
genomic: CTATCGAGTCCTGAAAACAAGgtaattcaag ... ttttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
EST: gi|124959758|gb|EL034462.1|EL034462
EST:     CTATCGAGTCCTGAAACCAAG                         GAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
genomic: CTATCGAGTCCTGAAAACAAGgtaattcaag ... ttttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
EST: gi|164163859|gb|ES188038.1|ES188038
EST:     TGAAACTCCTTGCTATGTATCTATCGAGTCCTG-AAACAAG                         GAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
genomic: TGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAGgtaattcaag ... ttttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
EST: gi|47828603|gb|CK118287.1|CK118287
EST:     TACAGGCAGTGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAG                         GAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
genomic: TACAGGCAGTGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAGgtaattcaag ... ttttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGA
EST: gi|125311574|gb|EL325659.1|EL325659
EST:     ACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAAG                         GAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGG
genomic: ACTCCTTGCTATGTATCTATCGAGTCCTGAAAAC-AAGgtaattcaag ... ttttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttagtgatctgcattgttgaatacgtagttgtttctgtgattttggttagGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTATCAGGTTGATTGCTGGTACTATATTCATGCATGAGG
                     ttgaata  TA-rich tract