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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcagGATGCTGGATATGAGACCATAATGTTGAACTCAAATCCTGAAACAGTATCCACAGATTATGATACAAGCGATAGGCTCTATTTTGAACCTCTCACAATCG

Basic information

species Arabidopsis thaliana
transcript AT1G29900.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29900.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA15G05020.2 (Glycine max), 3'ss of exon 3
gtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaactttttta--tgctaaacttact-tatcta--ctttttttaatttatttgcagGATGCTGGATATGAGACCATAATGTTGAACTCAAATCCTGAAACAGTATCCACAGATTATGATACAAGCGATAGGCTCTATTTTGAACCTCTCACAATCG
       | |     | || |   | |  ||    ||   || |    ||||     || |  |  |||||  |||||| ||| ||  | || | || |  ||||||||||||| ||||||||||| || ||| |||||||||| || || ||||| |||||||||||||| || || ||  | || || ||||||||  | ||  | |
-----attctgacttaccttaagatttgacctgctagatggtta----tgttgagttttgtgcagttgctattcttactatatgtaacccttgtctattgcatttgcagGATGCAGGATATGAGACAATCATGGTGAACTCAAACCCCGAGACAGTTTCCACAGATTATGACACTAGTGACCGTCTATACTTTGAACCCTTGACCGTTG

upper sequence: AT1G29900.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G40380.1 (Glycine max), 3'ss of exon 3
gtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcagGATGCTGGATATGAGACCATAATGTTGAACTCAAATCCTGAAACAGTATCCACAGATTATGATACAAGCGATAGGCTCTATTTTGAACCTCTCACAATCG
     |    |   |   ||||  |    |    |      ||  |   ||||       ||  | ||     ||  | |   | || | || |  ||||||||||||| ||||||||||| || ||| |||||||||| || || ||||| |||||||||||||| || || ||| | || || ||||||||  | ||  | |
----attcccacttatcttaagatttgaccagctagatggttatgctgagttttgtgcagttgctactcttactatatgtaacccttgtctattgcatttgcagGATGCAGGATATGAGACAATCATGGTGAACTCAAACCCCGAGACAGTCTCCACAGATTATGACACTAGTGATCGCCTATACTTTGAACCCTTGACTGTTG

upper sequence: AT1G29900.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv06s0004g03360.t01 (Vitis vinifera), 3'ss of exon 2
-gtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcagGATGCTGGATATGAGACCATAATGTTGAACTCAAATCCTGAAACAGTATCCACAGATTATGATACAAGCGATAGGCTCTATTTTGAACCTCTCACAATCG
  |||| | ||        | |       ||||   ||  |   | | || |    || ||       |||| ||    || || |||  ||  | | |  |||| | || ||||||||||| || ||| |||| ||||||||||| |||||||| |||||||| |||||||| ||| | ||||| ||||||||  | ||  | |
attatggccttgtttgccatcacatggattccctttagttat--agccttatgcgtacattgcc---ttaaatttgtcaatttaatttaatttctgtttgcgcagAAAGCAGGATATGAGACAATCATGATGAATTCAAATCCTGAGACAGTATCTACAGATTACGATACAAGTGATCGTCTCTACTTTGAACCGTTGACTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcagGATGCTGGATATGAGACCATAATGTTGAACTCAAATCCTGAAACAGTATCCACAGATTATGATACAAGCGATAGGCTCTATTTTGAACCTCTCACAATCG
                                            tttattt  CT-rich tract
                  taaacttacttatcta  TA-rich tract