1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtgaaaatgtaagaaattatatttgttatttgtttgaatcattaataatcttcttctccatttgtattacaagaatgaattcaaacccgatacaccaaacttccgggaggaaagatcttcaaagtcatcacagtggaagccttgtgcagATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATGGTTACATCATGGTTAGTGCAAATGGAGGCCTTAATCAACAGCGCGTGGC
species | Arabidopsis thaliana |
transcript | AT1G29200.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG ATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATGEST: gi|116409036|gb|EG451628.1|EG451628
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... ccttgtgcagATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATG
EST: GATTCTCTTGCAAAG ATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATGEST: gi|116408820|gb|EG451412.1|EG451412
genomic: GATTCTCTTGCAAAGgttagtgaaa ... ccttgtgcagATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATG
EST: GATTCCCTTGCAAAG ATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATGEST: gi|116408809|gb|EG451401.1|EG451401
genomic: GATTCTCTTGCAAAGgttagtgaaa ... ccttgtgcagATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATG
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG ATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATG
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... ccttgtgcagATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgaaaatgtaagaaattatatttgttatttgtttgaatcattaataatcttcttctccatttgtattacaagaatgaattcaaacccgatacaccaaacttccgggaggaaagatcttcaaagtcatcacagtggaagccttgtgcagATAATAACAAAGCAGCTGTGGCATTAGAGAGGTCTAGAGAATTAAGCAATGGTTACATCATGGTTAGTGCAAATGGAGGCCTTAATCAACAGCGCGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG