1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaccaaattgaatatcatcatcttggctcaacaatgcaagtaattatctagcaatttcgaacttttaacttgatacttagtggcgttgaatgtgttggtgaagGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCTCATTCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTC
species | Arabidopsis thaliana |
transcript | AT1G29040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAGAATGCAATTTCTTCGAATTCGATTCCTGCTTTTAGGAGGG GTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTTAAGCTTEST: gi|47828009|gb|CK117693.1|CK117693
genomic: TAAGAATGCAATTTCTTCGAATTCGATTCCTGCTTTTAGGAGGGgtaccaaatt ... gttggtgaagGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATT-AAGCTT
EST: GGCTTGTAAGAATGCAATTTCTTCGAATTCGATTCCTGCTTTTAGGAGGG GTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGEST: gi|86077343|gb|DR373100.1|DR373100
genomic: GGCTTGTAAGAATGCAATTTCTTCGAATTCGATTCCTGCTTTTAGGAGGGgtaccaaatt ... gttggtgaagGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTG
EST: GGCTTGTAAGAATGCAATTTCTTCGAATTCGATTCCTGCTTTTAGGAGGG GTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTG
genomic: GGCTTGTAAGAATGCAATTTCTTCGAATTCGATTCCTGCTTTTAGGAGGGgtaccaaatt ... gttggtgaagGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTG
tagcaatttcgaacttttaacttgatacttagtggcgttgaatgtgttggtgaagGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCTCATTCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTC
aacttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaaattgaatatcatcatcttggctcaacaatgcaagtaattatctagcaatttcgaacttttaacttgatacttagtggcgttgaatgtgttggtgaagGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCTCATTCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA