1 5' 3' | 2 5' 3' | 3 5' 3' |
...tacatggaaactgagaatctgtttatgagtttattgtataagattgtggaatattccaatgatttgtgtgggaattgaagatttgattgacattaaacagGAGGAAAAAGCCATTGAAAGAGGGATACTTCCACTACTCCAGCGTGCCACTTTGGTTCAGACATTTGGTCAAAGGAACCATGTCTGTTTGGACGAAGGCT
species | Arabidopsis thaliana |
transcript | AT1G27440.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCTTGCTTCCATTATCAG GAGGAAAAAGCCATTGAAAGAGGGATACTTEST: gi|86072586|gb|DR368343.1|DR368343
genomic: ATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCTTGCTTCCATTATCAGgtagattatc ... cattaaacagGAGGAAAAAGCCATTGAAAGAGGGATACTT
EST: ATCACTTCTTTGTTGTGCCC-ATGACTTTGGAGCTTGCTTCCATTATCAG GAGGAAAAAGC-ATTG
genomic: ATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCTTGCTTCCATTATCAGgtagattatc ... cattaaacagGAGGAAAAAGCCATTG
gtggaatattccaatgatttgtgtgggaattgaagatttgattgacattaaacagGAGGAAAAAGCCATTGAAAGAGGGATACTTCCACTACTCCAGCGTGCCACTTTGGTTCAGACATTTGGTCAAAGGAACCATGTCTGTTTGGACGAAGGCT
gattgac putative branch site (score: 3)
aatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatggaaactgagaatctgtttatgagtttattgtataagattgtggaatattccaatgatttgtgtgggaattgaagatttgattgacattaaacagGAGGAAAAAGCCATTGAAAGAGGGATACTTCCACTACTCCAGCGTGCCACTTTGGTTCAGACATTTGGTCAAAGGAACCATGTCTGTTTGGACGAAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -aaactga
- - - - - - - - - - - - - - - - - - - - - - - - - - attccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatttga