1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttttaccccaaaaaaaaaaactatgctataaagtgaacttttgctcgatgtgtattccataaataagtaatcaaccaaatctgtaataaatccaaacagGGACTAATGACGGTGACACTCACCGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCTCATCCAGACGAATGCGACGATCCGAACAAGCTCC
species | Arabidopsis thaliana |
transcript | AT1G27080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tcgatgtgtattccataaataagtaatcaaccaaatctgtaataaatccaaacagGGACTAATGACGGTGACACTCACCGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCTCATCCAGACGAATGCGACGATCCGAACAAGCTCC
ataaataagtaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttaccccaaaaaaaaaaactatgctataaagtgaacttttgctcgatgtgtattccataaataagtaatcaaccaaatctgtaataaatccaaacagGGACTAATGACGGTGACACTCACCGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCTCATCCAGACGAATGCGACGATCCGAACAAGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - -caaaaaa
- - - - - - - - -aaaacta
- - - - - - - - - - - - - - - aaagtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaatc