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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctcacttacgtaccttttattgcgacacgcttctgtgatgatgcttaaagaaataccaaaatcattatcagtttttattgtgtggtgtagATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTA

Basic information

species Arabidopsis thaliana
transcript AT1G26230.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26230.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 2
-----gtttctcacttacgtaccttttattgcgacacgcttctgtgatgatgcttaaagaaataccaaaatcattatcagtttttatt-gtgtggtgtagATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTA
      || | |  ||   |   ||   ||     |   || |    || ||    |    |  |  |  ||   || |  ||| ||| |  |    ||||||||  ||||||| || || ||||||||||| |||||| | || || ||||| || || || || ||| ||||||| ||||||||||||||||||||| 
gaagaattgcccttttttttttattcatttttattataattttcacttgttggcctaccgcaccctcacttctaaattacgtttaatttgctttaattagATTGAGCTGGAGGATCCATTGGAGAATGTTGGGGTGAAATTGGTTAGACAAGCTGGCGCAAAAACGAATCACCTTGCTGGTGATGGTTCCACTACATCTG

upper sequence: AT1G26230.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ32217 (Selaginella moellendorffii), 3'ss of exon 2
gtttctcacttacgtaccttttattgcgacacgcttctgtgatgatgcttaaagaaataccaaaatcattatcagtttttattgtgtggtgtagATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTA
                                |  | ||   ||    |       || |     |     |   |  |     |||  | |||||||||||||| |||||| | |||||  |||| |||||||| ||||||||||| | | |||| || || ||  | || || |||||  | || || ||  
--------------------------------gtatgtgccttgtctttcttgttgatgctgtggt-----ttgctgatggaaatgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAAGCTGCTTCTAAAACCAACGATTTGGCTGGGGATGGAACGACGACTTCCT

upper sequence: AT1G26230.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ16507 (Selaginella moellendorffii), 3'ss of exon 2
gtttctcacttacgtaccttttattgcgacacgcttctgtgatgatgcttaaagaaataccaaaatcattatcagtttttattgtgtggtgtagATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTA
                                |  | |||  ||    |       || |     |     |   |  |     |||  | |||||||||||||| |||||| | |||||  |||| |||||||| ||||||||||| | | |||| || || ||  | || || |||||  | || || ||  
--------------------------------gtatgtgtcttgtctttcttgttgatgctgtggt-----ttgctgatggaaatgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAAGCTGCTTCTAAAACCAACGATTTGGCTGGGGATGGGACGACGACTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgatgcttaaagaaataccaaaatcattatcagtttttattgtgtggtgtagATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTA
                      aaaatcattatcagtt  TA-rich tract