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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcagcaggattatgctaatacttctatgtaagtagcctgccgattttgtactctgattgttcttgttgttggtagGATTTGCAAGTCAAAGCTTCTCCACCAGTTCAGCCTCCTGCATCTACTATAAATAATGACCCTGCTATAATTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G26110.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501034|gb|HO206574.1|HO206574
EST:     CAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAAG                         GATTTGCAAGTCAAAGCTTCTCCACCAGTTCAGCCTCCTGCATCTACTATA
genomic: CAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAAGgtattcagca ... ttgttggtagGATTTGCAAGTCAAAGCTTCTCCACCAGTTCAGCCTCCTGCATCTACTATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctatgtaagtagcctgccgattttgtactctgattgttcttgttgttggtagGATTTGCAAGTCAAAGCTTCTCCACCAGTTCAGCCTCCTGCATCTACTATAAATAATGACCCTGCTATAATTCAG
                              ctctgat  putative branch site (score: 4)
                                       ttcttgtt  putative PPT
                      attttgta  TA-rich tract