Sequence
atgc intronic sequence ATGC exonic sequencegtactacaactcgaacttgacacttgtatttagatatatcatgtagacaaggaagcaccgatgtcacaatcctctgcagATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G24240.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G24240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G34520.1 (Glycine max), 3'ss of exon 2
--gtactacaactcgaacttgacacttgtatttagata--tatcatgtagaca--aggaagcaccgatgtcaca-atcctctgcagATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTG
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gcatgtgactgctcttgattgttttaaataagaacattccttttattttgtcatttgtaaaaatggttggtatttatatgctttagATTTTAGACAAGGAGGCTGTAGAGGATGTGAGAGGGCAAAGAGAGATACCTGACATAAAGCCTGGTTATATTGTGCAACTCAAAGTG
upper sequence: AT1G24240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv17s0000g09390.t01 (Vitis vinifera), 3'ss of exon 3
----------------gtactac--aactcgaacttgacactt-----gtatttagatatatcatgtagacaaggaagcaccgatg-tcacaatcctct-gcagATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTG
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gcatgcttcattttgagcactgttggaatcaatagtaacactttccaggtctttcattaattcttttatttttatttttatttttaatcatgctgtacttgcagATTCTAGATAAGGAAGCAGTGGAGGAGGTGAGGGCAAAGAGAGAGATACCTGAGATAAAGCCTGGTTATATTGTTCAGCTCAAAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116420245|gb|EG462837.1|EG462837EST: AGAGAATCAAGTTTAAGCGGCTTGATAAAACCGCTAAGCATATTATGCAG ATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCA
genomic: AGAGAATCAAGTTTAAGCGGCTTGATAAAACCGCTAAGCATATTATGCAGgtactacaac ... tcctctgcagATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtatttagatatatcatgtagacaaggaagcaccgatgtcacaatcctctgcagATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTG
tcctctgc CT-rich tract
ttagatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactacaactcgaacttgacacttgtatttagatatatcatgtagacaaggaagcaccgatgtcacaatcctctgcagATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT