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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtcctttgttggttagggacttgatgtgcatttgcaattatgatctagcacttgatttgtccatagttattggcagttcctaacttgggctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG

Basic information

species Arabidopsis thaliana
transcript AT1G23310.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G23310.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ23041 (Selaginella moellendorffii), 3'ss of exon 1
tggtcctttgttggttagggacttgatgtgcatttgcaattatgatctagcacttgatttgtccatagttattggcagttcctaacttgggctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG
                           ||  |   ||| |  ||| | | |  ||  ||  | | |  || ||  |  |       |     |   | |||| || || ||||||||||| ||||| || ||| ||||||||||||||||||| ||||||||||||
---------------------------gtaaa---gcagtagtgaccaatcgattttttctttccttttttttctctataagcctgtgaattttccatagATAATCTTTACAAACGTTGGAAACCCACACGCTCTAGGACAGAAGCCATTGACGTTTCCTCGCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074112|gb|DR369869.1|DR369869
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|152034049|gb|BP866344.2|BP866344
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGGAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074113|gb|DR369870.1|DR369870
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074142|gb|DR369899.1|DR369899
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|116482909|gb|EG525501.1|EG525501
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074122|gb|DR369879.1|DR369879
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACC-TCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074111|gb|DR369868.1|DR369868
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGACCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGA-CCCTCATGCTTTAGGACAGAGGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074137|gb|DR369894.1|DR369894
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGNAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074131|gb|DR369888.1|DR369888
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|125109057|gb|EL161694.1|EL161694
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATG
EST: gi|86074128|gb|DR369885.1|DR369885
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074133|gb|DR369890.1|DR369890
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGARRGWAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACC-TCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074105|gb|DR369862.1|DR369862
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|124939066|gb|EL015639.1|EL015639
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTA
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTA
EST: gi|116434550|gb|EG477142.1|EG477142
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074118|gb|DR369875.1|DR369875
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|125213803|gb|EL228577.1|EL228577
EST:     TTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGACAAAAAG                         ATTATTTTCAC
genomic: TTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGG-CAAAAAGgtaaacactt ... gctataacagATTATTTTCAC
EST: gi|164012234|gb|EL990513.1|EL990513
EST:     GGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074145|gb|DR369902.1|DR369902
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACC-TCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074138|gb|DR369895.1|DR369895
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|124986641|gb|EL059147.1|EL059147
EST:     AGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: AGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|124845008|gb|EH929445.1|EH929445
EST:     AGGTGAACTTTATCTCCGAGCTTCTGAAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAAC
genomic: AGGTGAACTTTATCTCCGAGCTTCTGA-GCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAAC
EST: gi|86074116|gb|DR369873.1|DR369873
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074119|gb|DR369876.1|DR369876
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACC-TCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074121|gb|DR369878.1|DR369878
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACC-TCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|116434562|gb|EG477154.1|EG477154
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074120|gb|DR369877.1|DR369877
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074139|gb|DR369896.1|DR369896
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|124728942|gb|EH820344.1|EH820344
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCC
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCC
EST: gi|86074115|gb|DR369872.1|DR369872
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACC-TCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|116482910|gb|EG525502.1|EG525502
EST:     AGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: AGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074146|gb|DR369903.1|DR369903
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|116400460|gb|EG443052.1|EG443052
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074107|gb|DR369864.1|DR369864
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074110|gb|DR369867.1|DR369867
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074127|gb|DR369884.1|DR369884
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|124916133|gb|EH990007.1|EH990007
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACA
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACA
EST: gi|125091884|gb|EL149707.1|EL149707
EST:     AAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: AAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074144|gb|DR369901.1|DR369901
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACC-TCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074123|gb|DR369880.1|DR369880
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074125|gb|DR369882.1|DR369882
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074132|gb|DR369889.1|DR369889
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074106|gb|DR369863.1|DR369863
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074109|gb|DR369866.1|DR369866
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074129|gb|DR369886.1|DR369886
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074143|gb|DR369900.1|DR369900
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|152038525|gb|AV826916.2|AV826916
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
EST: gi|86074136|gb|DR369893.1|DR369893
EST:     GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG                         ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG
genomic: GAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGgtaaacactt ... gctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagcacttgatttgtccatagttattggcagttcctaacttgggctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG
                                  tcctaac  putative branch site (score: 1)
                   atagttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggtcctttgttggttagggacttgatgtgcatttgcaattatgatctagcacttgatttgtccatagttattggcagttcctaacttgggctataacagATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC