1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgagtgaccatatatacgcgatataccaaatttacaatttctatagcctacgaaaatttgtaatcttgattcctaaagctttttatcttttcttccacagGACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAG
species | Arabidopsis thaliana |
transcript | AT1G22710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTTTTGCACTAGCTTCCATATTTTCAACCAATTCCGGTGCCGGCCAAG GACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAGEST: gi|125223639|gb|EL237724.1|EL237724
genomic: TCCTTTTGCACTAGCTTCCATATTTTCAACCAATTCCGGTGCCGGCCAAGgtaaatattc ... tcttccacagGACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAG
EST: CCTTTTGCACTAGCTTCCATATTTTCTAACCAATTCCGGTGCCGGCCAAG GACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAGATGGTAAEST: gi|124750276|gb|EH840406.1|EH840406
genomic: CCTTTTGCACTAGCTTCCATATTTTC-AACCAATTCCGGTGCCGGCCAAGgtaaatattc ... tcttccacagGACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAGATGGTAA
EST: CCTTTTGCACTAGCTTCCATATTTTCAACCAATTCCGGTGCCGGCCAAG GACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAGEST: gi|125031031|gb|EL103300.1|EL103300
genomic: CCTTTTGCACTAGCTTCCATATTTTCAACCAATTCCGGTGCCGGCCAAGgtaaatattc ... tcttccacagGACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAG
EST: CCTTTTGCACTAGCTTCCATATTTTCAACCAATTCCGGTGCCGGCCAAG GACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAG
genomic: CCTTTTGCACTAGCTTCCATATTTTCAACCAATTCCGGTGCCGGCCAAGgtaaatattc ... tcttccacagGACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAG
gcctacgaaaatttgtaatcttgattcctaaagctttttatcttttcttccacagGACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAG
tcctaaa putative branch site (score: 2)
ctttttatcttttctt CT-rich tract
aaaatttgtaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtgaccatatatacgcgatataccaaatttacaatttctatagcctacgaaaatttgtaatcttgattcctaaagctttttatcttttcttccacagGACTTTCCCTAGGTGTTCTGAATCTAGCCATTGTCGTCCCTCAG
- - - - - - - - - - - -taccaaa
- - - - - - - - - - - - - - - - - - - - - - - - -acgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctaaa