1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtctcctctttgaatctgtttctcaaaacctatatttcatcgttttttgggattaggaagaagtagttaacattgattctaaattgtttgtttctcttttttgtgtgtgttatgtgtgaagTTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAATGGAGACAAAAGTGAAAATGGTCTTACTACTCATGAAAAGCTTATTTGGG
species | Arabidopsis thaliana |
transcript | AT1G22100.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGCTGTT-ATTTGGTTCTTGCTTACACTGGATCTTCTCCCTCTTTC TTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAATEST: gi|116379661|gb|EG422253.1|EG422253
genomic: AAGGAGCTGTTAATTTGGTTCTTGCTTACACTGGATCTTCTCCCTCTTTCgttagtctcc ... atgtgtgaagTTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAAT
EST: AAGGAGCTGTTAATTTGGTTCTTGCTTACACTGGATCTTCTCCCTCTTTC TTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAATEST: gi|116379648|gb|EG422240.1|EG422240
genomic: AAGGAGCTGTTAATTTGGTTCTTGCTTACACTGGATCTTCTCCCTCTTTCgttagtctcc ... atgtgtgaagTTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAAT
EST: TCTTGCTTACACTGGATCTTCTCCCTCTTTC TTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAATEST: gi|116379651|gb|EG422243.1|EG422243
genomic: TCTTGCTTACACTGGATCTTCTCCCTCTTTCgttagtctcc ... atgtgtgaagTTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAAT
EST: AAGGAGCTGTTAATTTGGTTCTTGCTTACACTGGATCTTCTCCCTCTTTC TTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAAT
genomic: AAGGAGCTGTTAATTTGGTTCTTGCTTACACTGGATCTTCTCCCTCTTTCgttagtctcc ... atgtgtgaagTTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAAT
ttaacattgattctaaattgtttgtttctcttttttgtgtgtgttatgtgtgaagTTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAATGGAGACAAAAGTGAAAATGGTCTTACTACTCATGAAAAGCTTATTTGGG
ttctaaa putative branch site (score: 2)
attgattctaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtctcctctttgaatctgtttctcaaaacctatatttcatcgttttttgggattaggaagaagtagttaacattgattctaaattgtttgtttctcttttttgtgtgtgttatgtgtgaagTTGGGAAAGATGATGAGGATACAAAAAATGCCAAAGGATGGGAATGAAAATGGAGACAAAAGTGAAAATGGTCTTACTACTCATGAAAAGCTTATTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA