Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86086185|gb|DR381944.1|DR381944EST: CATTACTATGCATATTGTTCTTCGCCTTCCTACGTTAGACAAAAAGAGCG AAAAACTGCAGAATGATCCACCGATGAAGAATCGCTGCGTGTGCACCATTT
genomic: CATTACTATGCATATTGTTCTTCGCCTTCCTACGTTAGACAAAAAGAGCGgtaattttct ... tgttccacagAAAAACTGCAGAATGATCCACCGATGAAGAATCGCTGCGTGTGCACCATTT
EST:
gi|19799724|gb|AU231014.1|AU231014EST: CATTACTATGCATATTGTTCTTCGCCTTCCTACGTTAGACAAAAAGAGCG AAAAACTGCAGAATGATCCACCGAT-AAGAATCGCTGCGTGTGCACCATTT
genomic: CATTACTATGCATATTGTTCTTCGCCTTCCTACGTTAGACAAAAAGAGCGgtaattttct ... tgttccacagAAAAACTGCAGAATGATCCACCGATGAAGAATCGCTGCGTGTGCACCATTT
EST:
gi|125148923|gb|EL182344.1|EL182344EST: TTGTTCTTCGCCTTCCTACGTTAGACAAAAAGAGCG AAAAACTGCAGAATGATCCACCGATGAAGAATCGCTGCGTGTGCACCATTT
genomic: TTGTTCTTCGCCTTCCTACGTTAGACAAAAAGAGCGgtaattttct ... tgttccacagAAAAACTGCAGAATGATCCACCGATGAAGAATCGCTGCGTGTGCACCATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggctttgagatcatgttcatatcatctcattatatgaaaattttctgttccacagAAAAACTGCAGAATGATCCACCGATGAAGAATCGCTGCGTGTGCACCATTTTGTAGCTGCAAGTAAATTGGATCATAGAGATTTATATCCGTCATGATCA
ttttctgttcc CT-rich tract
atctcattatatgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattttctctaccttgttatactgtttatcgcagtgtaacaacatgttcccttgaattctgtactcgttaactatggctttgagatcatgttcatatcatctcattatatgaaaattttctgttccacagAAAAACTGCAGAATGATCCACCGATGAAGAATCGCTGCGTGTGCACCATTTTGTAGCTGCAAGTAAATTGGATCATAGAGATTTATATCCGTCATGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC