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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtcttcttttcacttctatgtaaacatctttccctctctgatgtgaaaactcaactcttgtgaatgtgtatctgcagGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGTGAGAACTTAAACTATATAAAAGACAG

Basic information

species Arabidopsis thaliana
transcript AT1G21900.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084949|gb|DR380708.1|DR380708
EST:     GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAG                         GGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
genomic: GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGgcaagtcttc ... gtatctgcagGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
EST: gi|116421116|gb|EG463708.1|EG463708
EST:     GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAG                         GGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
genomic: GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGgcaagtcttc ... gtatctgcagGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
EST: gi|164127602|gb|ES039374.1|ES039374
EST:     TATTGCAGCTAAAGACTGGGACTCTGTTGACTAAAAAGGAAAAGATCGAG                         GGTGTTGAGCTTCAGT
genomic: TATTGCAGCTAAAGACTGGGACTCTGTTG-CTAAAAAGGAAAAGATCGAGgcaagtcttc ... gtatctgcagGGTGTTGAGCTTCAGT
EST: gi|124743061|gb|EH834223.1|EH834223
EST:     GTATTGCAGCTAAACACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAG                         GGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
genomic: GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGgcaagtcttc ... gtatctgcagGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatctttccctctctgatgtgaaaactcaactcttgtgaatgtgtatctgcagGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGTGAGAACTTAAACTATATAAAAGACAG
             ctctgat  putative branch site (score: 4)