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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgttttaatgactatagagatctactgatatttgattgagtctaggctaggagcctaggatgcttaaagttttgaccttgttttgtttctctagTCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTAT

Basic information

species Arabidopsis thaliana
transcript AT1G21380.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072584|gb|DR368341.1|DR368341
EST:     GATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAG                         TCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAA
genomic: GATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGgtaagtcgtt ... gtttctctagTCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctaggctaggagcctaggatgcttaaagttttgaccttgttttgtttctctagTCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTAT
                              ttttgac  putative branch site (score: 3)
                                    ccttgttttgtttctc  CT-rich tract
                        ttaaagtttt  TA-rich tract