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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagctttactttcacttggttactatatttagatctctcctttagcttttgattgattgtgacattgtgatgtttttggtattgttctatgagcaacagGGACACAAGCCTCTACCTGGTGACATGGCTGGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTTTCTTCCACTTTTGATAGCC

Basic information

species Arabidopsis thaliana
transcript AT1G19350.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124776386|gb|EH866513.1|EH866513
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGACA
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGACA
EST: gi|124892858|gb|EH971760.1|EH971760
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGACATGG
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGACATGG
EST: gi|124989707|gb|EL062001.1|EL062001
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGAACACAAGCCTCTACCTGGTGACATGGC
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGA-CACAAGCCTCTACCTGGTGACATGGC
EST: gi|164093419|gb|EL983705.1|EL983705
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGA
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGA
EST: gi|164100003|gb|EL982172.1|EL982172
EST:     GGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGACATGGCTGGATCATCTTCTCGAGCAACT
genomic: GGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGACATGGCTGGATCATCTTCTCGAGCAACT
EST: gi|124892095|gb|EH970997.1|EH970997
EST:     TTCTGAAGCTGGTTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGACATGGCTGGATCAT
genomic: TTCTGAAGCTGG-TTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGACATGGCTGGATCAT
EST: gi|124972895|gb|EL046561.1|EL046561
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTA
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttttgattgattgtgacattgtgatgtttttggtattgttctatgagcaacagGGACACAAGCCTCTACCTGGTGACATGGCTGGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTTTCTTCCACTTTTGATAGCC
      gattgat  putative branch site (score: 4)
                         atgttttt  TA-rich tract