Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatccatgttaaattcctcattcttcgtttgataacacggtactgaatcatacgacataatatttagGTGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAATCATTGAACATCTCGGGATTGGTGAGTTTTTCTCCGAGATTAACACAAAT

Basic information

species Arabidopsis thaliana
transcript AT1G17710.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116473856|gb|EG516448.1|EG516448
EST:     ACGTGTCATCCCAGCCATCAAATCTGCTCATGCTTTAGG                         GTGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAAT
genomic: ACGTGTCATCCCAGCCATCAAATCTGCTCATGCTTTAGGgtaaaaatcc ... taatatttagGTGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAAT
EST: gi|116406438|gb|EG449030.1|EG449030
EST:     CCAATTCATCCACGTGTCATCCCAGCCATCAAATCTGCTCATGCTTTAGG                         GTGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAAT
genomic: CCAATTCATCCACGTGTCATCCCAGCCATCAAATCTGCTCATGCTTTAGGgtaaaaatcc ... taatatttagGTGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcctcattcttcgtttgataacacggtactgaatcatacgacataatatttagGTGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAATCATTGAACATCTCGGGATTGGTGAGTTTTTCTCCGAGATTAACACAAAT
                 tgataac  putative branch site (score: 2)
                                          acataatattta  TA-rich tract