1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttttgggatcacatatatatttctatactagcctttatgcttttgaatgcagcaaagatttgctagtttctgacttatcttcaccctgtaaactgttagCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATTTAAGTTCCACTCTAAAGAAGACTTAAAGAAATGGCATCTCTATTCCGA
species | Arabidopsis thaliana |
transcript | AT1G17350.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATGCGACAAAGAAGG CTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATEST: gi|116443700|gb|EG486292.1|EG486292
genomic: AAATGCGACAAAGAAGGgtattcgcct ... aaactgttagCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATAT
EST: GTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCGACAAAGAAGG CTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATAT
genomic: GTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCGACAAAGAAGGgtattcgcct ... aaactgttagCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATAT
gaatgcagcaaagatttgctagtttctgacttatcttcaccctgtaaactgttagCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATTTAAGTTCCACTCTAAAGAAGACTTAAAGAAATGGCATCTCTATTCCGA
ttctgac putative branch site (score: 2)
aaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgggatcacatatatatttctatactagcctttatgcttttgaatgcagcaaagatttgctagtttctgacttatcttcaccctgtaaactgttagCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATTTAAGTTCCACTCTAAAGAAGACTTAAAGAAATGGCATCTCTATTCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA