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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccctttcttgcacattattaactccaaattttggctaatccttgctgctactggactctttgaaaatgctggtttagtggcttttgggtttaaaaggtttaaggctatgttttcctcagGGAGTTAAGCAAGTTCTAGTAAAACTCGGGTCCAAAGGATCTGCACTATTCATACAAGGGGAAAAACCAATCCAGCAGTCTATCATACCGGCTGCACAAG

Basic information

species Arabidopsis thaliana
transcript AT1G17160.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17160.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G33840.1 (Glycine max), 3'ss of exon 2
gtaagtccctttcttgcacattattaactccaaattttggctaatccttgctgctactggactctttgaaaatgctggtttagtggcttttgggtttaaaaggtttaaggctatgttttcctcagGGAGTTAAGCAAGTTCTAGTAAAACTCGGGTCCAAAGGATCTGCACTATTCATACAAGGGGAAAAACCAATCCAGCAGTCTATCATACCGGCTGCACAAG
    |     ||| || |   |  ||     | |  | |  | || | |  ||    |    || |||  | ||  |   ||||  |  |   || | |||                    ||||||||||||||||||||| || ||||| |||   ||||||||||| || ||  || |||| ||||||||||| |||||| ||  |||||  |||  |  ||
----ggttgattcctgaaggctgatagaatgatagat-gaatgatgcattttggcgttta--tcattgtgagtgacgcaatagtctcaataatgtctgaaa------------------tttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTTGTAGAAGGAGAAAAACCAATTCAGCAGCCTGCCATACTTGCTAAAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgctggtttagtggcttttgggtttaaaaggtttaaggctatgttttcctcagGGAGTTAAGCAAGTTCTAGTAAAACTCGGGTCCAAAGGATCTGCACTATTCATACAAGGGGAAAAACCAATCCAGCAGTCTATCATACCGGCTGCACAAG
                                           tgttttcctc  CT-rich tract
                        tttaaaaggtttaa  TA-rich tract