1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtttttttgttattatacttctcgtgagattattttggtgtatgcaactaatcattgacattgtgtgcagGGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGCTGTGTTGCGTGTCAGCTTAGGGAATTTCTTGTTTTTCTCTATTCTATC
species | Arabidopsis thaliana |
transcript | AT1G16180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTCCCTT GGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGEST: gi|124733493|gb|EH824895.1|EH824895
genomic: ATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTCCCTTgtaagttttt ... ttgtgtgcagGGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATG
EST: TGGAGAAGCTCCCTT GGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGEST: gi|125270882|gb|EL284967.1|EL284967
genomic: TGGAGAAGCTCCCTTgtaagttttt ... ttgtgtgcagGGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATG
EST: TTCATGGATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTCCCTT GGATTAACCATTT
genomic: TTCATGGATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTCCCTTgtaagttttt ... ttgtgtgcagGGATTAACCATTT
tacttctcgtgagattattttggtgtatgcaactaatcattgacattgtgtgcagGGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGCTGTGTTGCGTGTCAGCTTAGGGAATTTCTTGTTTTTCTCTATTCTATC
agattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttttgttattatacttctcgtgagattattttggtgtatgcaactaatcattgacattgtgtgcagGGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGCTGTGTTGCGTGTCAGCTTAGGGAATTTCTTGTTTTTCTCTATTCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT