1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacactcttaatgctcaaaaaaatcgtttcttttcatatagtattattttggtcttgtgtgttttgactctgtattcatgattttctcattgatttccagTACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCG
species | Arabidopsis thaliana |
transcript | AT1G16040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCAGAGAAATGCTCG TACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCG
genomic: TCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCAGAGAAATGCTCGgtgagtatag ... tgatttccagTACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCG
attttggtcttgtgtgttttgactctgtattcatgattttctcattgatttccagTACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCG
ttttctcatt CT-rich tract
atgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacactcttaatgctcaaaaaaatcgtttcttttcatatagtattattttggtcttgtgtgttttgactctgtattcatgattttctcattgatttccagTACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
tacactc
- - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - -attttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg