1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttggttctttctctcagttgttttgcaattcatgatgtcagtagatataaatgtgtgtgcttgaattataaaaatcttttgatgataagcgtaaagcctatctctcgctctcattttgatctacagaagaatcatcttggaaacgctcttgattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTATCACAGCCAGATGATGGGTGGAAAGGGGAAACTGGATATGTGCAGGTGA
species | Arabidopsis thaliana |
transcript | AT1G15140.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG GAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTAEST: gi|86017445|gb|DR313191.1|DR313191
genomic: ACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAGgtttggttct ... gattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTA
EST: ACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG GAAAAGTTTAAAGAGTGGGAATCNNNNNNNTGTCAAAGTTGTGCCGGTATTEST: gi|125123271|gb|EL169720.1|EL169720
genomic: ACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAGgtttggttct ... gattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGG-TGTCAAAGTTGTGCCGGTATT
EST: TACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG GAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTAEST: gi|125146585|gb|EL181237.1|EL181237
genomic: TACGGGGCTAGGAACCTGAATAGGATGGCTTACCAGgtttggttct ... gattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTA
EST: CGTAAGACTCTATTACGGGGCTAGGAACCTAGAATAGGATGGCTTACCAG GAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTAEST: gi|116475122|gb|EG517714.1|EG517714
genomic: CGTAAGACTCTATTACGGGGCTAGGAACCT-GAATAGGATGGCTTACCAGgtttggttct ... gattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTA
EST: ACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG GAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTAEST: gi|124928161|gb|EL005828.1|EL005828
genomic: ACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAGgtttggttct ... gattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTA
EST: AACCTGAATAGGATGGCTTACCAG GAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTAEST: gi|125033249|gb|EL105518.1|EL105518
genomic: AACCTGAATAGGATGGCTTACCAGgtttggttct ... gattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTA
EST: AGGATGGCTTACCAG G-AAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTA
genomic: AGGATGGCTTACCAGgtttggttct ... gattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTA
cgctctcattttgatctacagaagaatcatcttggaaacgctcttgattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTATCACAGCCAGATGATGGGTGGAAAGGGGAAACTGGATATGTGCAGGTGA
tcttgat putative branch site (score: 4)
attttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggttctttctctcagttgttttgcaattcatgatgtcagtagatataaatgtgtgtgcttgaattataaaaatcttttgatgataagcgtaaagcctatctctcgctctcattttgatctacagaagaatcatcttggaaacgctcttgattttgtagGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATTATCACAGCCAGATGATGGGTGGAAAGGGGAAACTGGATATGTGCAGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA