Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtttctatttcagccttctttgattgaattgtttaatgattgtgctgagttgtgattctgcttcttcgtcttctttgcattggtgtgttttcttagGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G14810.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453473|gb|EG496065.1|EG496065
EST:     GTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAG                         GTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
genomic: GTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAGgttttgtttc ... gttttcttagGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
EST: gi|125029978|gb|EL102247.1|EL102247
EST:     GTTCAGCAGACTCGTGAG                         GTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
genomic: GTTCAGCAGACTCGTGAGgttttgtttc ... gttttcttagGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
EST: gi|116396484|gb|EG439076.1|EG439076
EST:     GTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAG                         GTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
genomic: GTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAGgttttgtttc ... gttttcttagGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
EST: gi|124903300|gb|EH977380.1|EH977380
EST:     CAGACTCGTGAG                         GTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
genomic: CAGACTCGTGAGgttttgtttc ... gttttcttagGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
EST: gi|116453474|gb|EG496066.1|EG496066
EST:     GTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAG                         GTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
genomic: GTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAGgttttgtttc ... gttttcttagGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
EST: gi|164080015|gb|ES142038.1|ES142038
EST:     GTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAG                         GTTTTAGAGGGTAAACC
genomic: GTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAGgttttgtttc ... gttttcttagGTTTTAGAGGGTAAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctgagttgtgattctgcttcttcgtcttctttgcattggtgtgttttcttagGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG
                                            tgttttctt  CT-rich tract
                                              ttttctta  TA-rich tract