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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtttgggattcctaactcatccttaaaatgaatgaggattattctaactgtaatgttgttcacatgtacaaagAAATCTGCTAAGAAAGAAGAGCTGGTGGAATCGGTGACAGAAGATTTGTCAAACTTAACAGTTGATCCTCCGGTGGTTTCATCACAACCAGTTCCAGCTT

Basic information

species Arabidopsis thaliana
transcript AT1G14380.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877105|gb|AU237936.1|AU237936
EST:     TCGGGAAGAAGTCGCCTAAGTCGAATTCGGATAACCGAAGCCAGAAACTG                         AAATCTGCTAAGAAAGAAGAGCTGGTGGAATCGGTGACAGAAGATTTGTCA
genomic: TCGGGAAGAAGTCGCCTAAGTCGAATTCGGATAACCGAAGCCAGAAACTGgtaagagttt ... atgtacaaagAAATCTGCTAAGAAAGAAGAGCTGGTGGAATCGGTGACAGAAGATTTGTCA
EST: gi|124705089|gb|EH796491.1|EH796491
EST:     TCGGGAAGAAGTCGCCTAAGTCGAATTCGGATAACCGAAGCCAGAAACTG                         AAATCTGCTAAGAAAGAAGAGCTGGTGGAATCGGTGACAGAAGATTTGTCA
genomic: TCGGGAAGAAGTCGCCTAAGTCGAATTCGGATAACCGAAGCCAGAAACTGgtaagagttt ... atgtacaaagAAATCTGCTAAGAAAGAAGAGCTGGTGGAATCGGTGACAGAAGATTTGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccttaaaatgaatgaggattattctaactgtaatgttgttcacatgtacaaagAAATCTGCTAAGAAAGAAGAGCTGGTGGAATCGGTGACAGAAGATTTGTCAAACTTAACAGTTGATCCTCCGGTGGTTTCATCACAACCAGTTCCAGCTT
                       ttctaac  putative branch site (score: 1)
     taaaatgaat  TA-rich tract