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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgttttctctctttttccctttagaatctgtcctccggattagggtttggctgaattgtactttgtctagtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGACACATTACAG

Basic information

species Arabidopsis thaliana
transcript AT1G13770.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 2
---------gcaagtgttttctctctttttccctttagaatctgtcctccggattagggtt--tggctgaatt----gtactttgtcta-----gtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGACACATTACAG
           |  | | |       ||||||    |  || |     ||  |  |   ||  |   | ||        |  ||||| |      ||||||| |||||| |||||||||||||||||||||     ||||| ||||||||  |||| |||
tatatatatatatatatatatatatattttccaaaaaagatgtacatgccaaaacatttttgatcattaaacccaacacatgttgtccatgtaaatgcagGGTTTTCCTAGCAGTGTAACTCCAGATTATGCTCCTTTTCAATTATGGGATTCATTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069179|gb|DR364936.1|DR364936
EST:     ATCGCTTTAATCATGTGTGGAGACGAGTTCTTCAAGCATTTGTACCAGAG                         GGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGAC
genomic: ATCGCTTTAATCATGTGTGGAGACGAGTTCTTCAAGCATTTGTACCAGAGgcaagtgttt ... tctagtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGAC
EST: gi|19876024|gb|AU236855.1|AU236855
EST:     ATCGCTTTAATCATGTGTGGAGACGAGTTCTTCAAGCATTTGTACCAGAG                         GGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGAC
genomic: ATCGCTTTAATCATGTGTGGAGACGAGTTCTTCAAGCATTTGTACCAGAGgcaagtgttt ... tctagtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGAC
EST: gi|86069180|gb|DR364937.1|DR364937
EST:     ATCGCTTTAATCATGTGTGGAGACGAGTTCTTCAAGCATTTGTACCAGAG                         GGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGAC
genomic: ATCGCTTTAATCATGTGTGGAGACGAGTTCTTCAAGCATTTGTACCAGAGgcaagtgttt ... tctagtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaatctgtcctccggattagggtttggctgaattgtactttgtctagtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGACACATTACAG
                                        ctttgtct  CT-rich tract
                                 aattgta  TA-rich tract