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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtattttcctttggtttgctaattctgtgaatcatgaatgatgggaacaattcttacaagattgaaatgcgtgatattttgattgaatccataagaacaaagctttgtgattatttcgaaagcttgaatctttgtataagcaagctcaagaaagaacaaaaaggttgagactttttttattttgttttgcagGTTGCAGAAAGAGCTTTGTTCTTATGGAACAACGATCATATCGAGAATCTAATAATGCAGAACCGGAAAGTTATTCTTCCAATCATATTCCCTGCATTGG

Basic information

species Arabidopsis thaliana
transcript AT1G13460.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os03g62730.3 (Oryza sativa), 3'ss of exon 3
gtaattgtattttcctttggtttgctaattctgtgaatcatgaatgatgggaacaattcttacaagattgaaatgcgtgatattttgattgaatccataagaacaaagctttgtg---attatttcgaaa-gcttgaatctttgtataagcaagctcaagaaagaacaaaaaggttgagactttttttattttgttttgcagGTTGCAGAAAGAGCTTTGTTCTTATGGAACAACGATCATATCGAGAATCTAATAATGCAGAACCGGAAAGTTATTCTTCCAATCATATTCCCTGCATTGG
                                                                                                 |  |   ||   ||  ||   ||||| | |||      ||| | |  |||| |||   |     | | |    |    |   |   |  ||||  |  ||   ||||||| || ||||| ||||| || |||||||| ||||||||||||||||| || |  || ||  | |  || ||  | || ||||| ||||||||| | |
-------------------------------------------------------------------------------------------------tgcggggaattgttaatgcaaattatattgaagcagcagaaacatgatatacgcatattggttgatggatttta----tctaatagtgcttatgctacttc-tagGTTGCTGAGAGAGCATTGTTTTTGTGGAACAATGATCATATCGAGAATCTGATCAAACAAAATAGTAGGGTGATCTTACCTATCATCTTCCCTGCACTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcaagctcaagaaagaacaaaaaggttgagactttttttattttgttttgcagGTTGCAGAAAGAGCTTTGTTCTTATGGAACAACGATCATATCGAGAATCTAATAATGCAGAACCGGAAAGTTATTCTTCCAATCATATTCCCTGCATTGG
                                 ctttttttattttgtt  CT-rich tract
                              agactttttttatttt  TA-rich tract