1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttggccattataagattcttctcttggtttgttctgttattgctgaatacttgtatatacagttcatgagttatcttgaaccttgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGCAATTTCCAGATTCTGGACATTAATGGTTCCACAT
species | Arabidopsis thaliana |
transcript | AT1G11860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACAEST: gi|125268287|gb|EL282372.1|EL282372
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACA
EST: TCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAAGAAAGACTTGAEST: gi|124949036|gb|EL024707.1|EL024707
genomic: TCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAA-GAA-GACTTGA
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAAEST: gi|125184453|gb|EL199407.1|EL199407
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAA
EST: GAGAGATCTCTTCTTG-CCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|164191447|gb|ES022908.1|ES022908
genomic: GAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: CCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACEST: gi|125262497|gb|EL276582.1|EL276582
genomic: CCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGAC
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGEST: gi|124786384|gb|EH876063.1|EH876063
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTG
EST: CTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|124771198|gb|EH861328.1|EH861328
genomic: CTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: TGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGACCCTTCAG GGTCCTTTGGCTGCTCCAGTGEST: gi|124958907|gb|EL033618.1|EL033618
genomic: TGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTG-CCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTG
EST: CATATCCACGACGAGAGATCTCTTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|124841734|gb|EH926171.1|EH926171
genomic: CATATCCACGACGAGAGATCTC-TTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: TGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTACTTGCCCTTCAG GGTCCTTTGGCTGCTCCAEST: gi|125019285|gb|EL091554.1|EL091554
genomic: TGATGTCTCGTGGCATATCCACGACGAGAGATCTCTT-CTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCA
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTEST: gi|47832124|gb|CK121808.1|CK121808
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCT
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|47832114|gb|CK121798.1|CK121798
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|124757126|gb|EH847256.1|EH847256
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: CTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|125229820|gb|EL243905.1|EL243905
genomic: CTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: TCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|47829607|gb|CK119291.1|CK119291
genomic: TCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTNCA-CACCTGACTAAAGAAGACTTGAGEST: gi|116483791|gb|EG526383.1|EG526383
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTT-CAACACCTGACTAAAGAAGACTTGAG
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|164044632|gb|ES148071.1|ES148071
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACEST: gi|124704748|gb|EH796150.1|EH796150
genomic: GTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAAC
EST: AGATCTCTTCTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCEST: gi|125187425|gb|EL202379.1|EL202379
genomic: AGATCTCTTCTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
EST: CTTGCCCTTCAG GGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
genomic: CTTGCCCTTCAGgtttggccat ... tgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGC
attgctgaatacttgtatatacagttcatgagttatcttgaaccttgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGCAATTTCCAGATTCTGGACATTAATGGTTCCACAT
aatacttgtatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggccattataagattcttctcttggtttgttctgttattgctgaatacttgtatatacagttcatgagttatcttgaaccttgtgatgcagGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGCAATTTCCAGATTCTGGACATTAATGGTTCCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT